Protein Biosynthesis in Eukaryotes

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53,49 

NATO Science Series A: 41

ISBN: 1468441264
ISBN 13: 9781468441260
Herausgeber: R Perez-Bercoff
Verlag: Springer Verlag GmbH
Umfang: xix, 501 S., 50 s/w Illustr., 501 p. 50 illus.
Erscheinungsdatum: 01.07.2012
Auflage: 1/2012
Produktform: Kartoniert
Einband: Kartoniert

InhaltsangabeSection I: The Protein Synthesizing Machinery of Eukaryotes.- 1: Structure and Function of tRNA and Aminoacyl tRNA Synthetases.- I. Aminoacylation.- A. Stoichiometry and Energetics.- B. Structure of Aminoacyl-tRNA.- C. Mechanism of Aminoacylation.- II. Structure of tRNA.- A. Multiplicity and Location of tRNA in the Cell.- B. Primary and Secondary Structure.- C. Tertiary Structure.- III. Structure of Aminoacyl tRNA Synthetase.- A. Multiplicity and Cellular Location.- B. Protein Structure.- C. Multi-Enzyme Complexes.- IV. Specificity of Aminoacylation.- A. Importance of Specificity.- B. Amino Acid Recognition.- C. tRNA Recognition.- V. Codon-Anticodon Recognition.- A. Codon Translation in the Cytoplasm.- B. Codon Translation in the Mitochondria.- C. Codon Translation in vitro.- VI. tRNA Recognition by the Eukaryotic Protein Synthesis System.- A. Initiation and Elongation Factors.- B. Rihosomes.- VII. Other Functions of tRNA.- A. tRNA-Like Structure in Viral RNA.- B. Primer for Reverse Transcriptase.- C. Aminoacyl-tRNA Protein Transferase.- D. Regulatory Functions.- VIII. tRNA Biosynthesis.- Acknowledgement.- References.- Appendix: Table 2. Published tRNA Sequences as for August 1, 1980.- 2: The Structure of Eukaryotic Ribosome.- I. General Characteristics of Eukaryotic Ribosomes.- II. Isolation and Characterization of Eukaryotic Ribosomal Proteins.- III. Primary Structure of Eukaryotic Ribosomal Proteins.- IV. RNA-Protein Interactions in Eukaryotic Ribosomes.- A. 5S rRNA.- B. E.8S rRNA.- C. E. coli 5S rRNA.- D. tRNA.- V. CODA.- References.- 3: The Initiation Factors.- I. Identification of the Initiation Factors.- II. Physical Characterization.- III. Covalent Modifications.- IV. Cellular Levels and Biogenesis.- V. Pathway of Initiation.- A. Dissociation of Ribosomes into Subunits.- B. Ternary Complex Formation.- C. Ternary Complex Binding to to 40S Subunits.- D. Binding of mRNA to 40S Subunits.- E. Junction of the 60S Subunit and Formation of the 80S Initiation Complex.- VI. Molecular Mechanism of Initiation.- A. mRNA-Ribosome Interaction.- B. Specific Factors for mRNA?.- C. Ribosomal Sites for Initiation.- Acknowledgements.- References.- Section II: On the Importance of Being Spliced.- 4: Messenger RNA Structure and Biosynthesis.- I. Determination of mRNA secondary structure.- II. Messenger RNA Processing: Historical Background.- III. Modified Nucleotides. – CAP structure.- IV. Sites of Transcriptional Initiation of mRNA.- V. Splicing.- VI. Order of Processing Reactions.- References.- 5: SV40 as a Model System for the Study of RNA Transcription and Processing in Eukaryotie Cells.- I. SV40 as a Model System.- II. Initiation of Transcription Of SV40 DNA Late After Infection.- III. The SV40 Minichromosome.- IV. Splicing of SV40 Late mRNA.- V. Mapping the „Leader“ and the „Body“ of the Viral mRNAs by Electron Microscopy.- A. Analysis of the DNA-RNA Hybrids.- B. Analysis of the R-Loop Structures.- VI. Models for Joining the „Leader“ to the Coding Sequences.- VII. Models for Splicing of mRNA.- A. Splicing Intermediates.- Conclusions.- Acknowledgements.- References.- 6: Messenger Ribonucleoprotein Particles.- I. Biological Properties.- A. Early Developments in Sea Urchin.- B. Differentiating Animal Cells.- C. Non-Differentiating or Terminally Differentiated Mammalian Cells.- II. Isolation and Composition.- III. Translation of mRNPs.- IV. Summary and Conclusions.- Acknowledgement.- References.- Section III: On Selecting the Right Messenger.- 7: Recognition of Initiation Sites in Eukaryotic mRNAs.- I. Characteristics of Initiation Regions in Eukaryotic Messenger RNAs.- II. Mechanisms which have been Proposed to explain Selection of Initiation Sites by Eukaryotic Ribosomes.- III. Evaluation of the „Scanning“ Model for Initiation.- A. A Summary of the Evidence.- B. Variations on the Theme.- C. How Can the Exception be Explained.- IV. Questions and Speculations.- A. An Economical Message Might Initiate at the First and Second AUG.- B. Role

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Beschreibung

vi The word ppotein, coined one and a half century ago from the 1TpOTE:toa ("proteios" = of primary importance), underlines the "primary importance" ascribed to proteins from the time they were described as biochemical entities. But the unmatched compl~xity of the process involved in their biosynthesis was (understandably) overlooked. Indeed, protein biosynthesis was supposed to be nothing more than the reverse of protein degradation, and the same enzymes known to split a protein into its constituent amino acids were thought to be able, under adequate conditions, to reconstitute the peptide bond. This oversimplified view persisted for more than 50 years: It was just in 1940 that Borsook and Dubnoff examined the thermodynamical aspects of the process, and concluded that protein synthesis could not be the reverse of protein degradation, such an "uphill task being thermody­ namically impossible --- - " The next quarter of a century witnessed the unravelling of the basic mechanisms of protein biosynthesis, a predictable aftermath of the Copernican revolution in biology which followed such dramatic de­ velopments as the discovery of the nature of the genetic material, the double helical structure· of DNA, and the determination of the ge­ netic code. Our present understanding of the sophisticated mechan­ isms of regulation and control is a relatively novel acquisition, and recent studies have shed some light into the structure and organi­ zation of the eukaryotic gene.

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