User-Level Workflow Design

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A Bioinformatics Perspective, Lecture Notes in Computer Science 8311 – Programming and Software Engineering

ISBN: 3642453880
ISBN 13: 9783642453885
Autor: Lamprecht, Anna-Lena
Verlag: Springer Verlag GmbH
Umfang: xxii, 223 S., 84 s/w Illustr., 223 p. 84 illus.
Erscheinungsdatum: 10.12.2013
Auflage: 1/2014
Produktform: Kartoniert
Einband: Kartoniert

InhaltsangabeThe Bio-jETI Framework.- Phylogenetic Analysis Workflows.- GeneFisher-P.- FiatFlux-P.- Microarray Data Analysis Pipelines.

Artikelnummer: 5968022 Kategorie:

Beschreibung

The continuous trend in computer science to lift programming to higher abstraction levels increases scalability and opens programming to a wider public. In particular, service-oriented programming and the support of semantics-based frameworks make application development accessible to users with almost no programming expertise. This monograph establishes requirement-centric scientific workflow design as an instance of consequent constraint-driven development. Requirements formulated in terms of user-level constraints are automatically transformed into running applications using temporal logic-based synthesis technology. The impact of this approach is illustrated by applying it to four very different bioinformatics scenarios: phylogenetic analysis, the dedicated GeneFisher-P scenario, the FiatFlux-P scenario, and microarray data analyses.

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Springer Verlag GmbH
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E-Mail: juergen.hartmann@springer.com

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